PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1250s0002.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 228aa    MW: 25861.5 Da    PI: 10.0003
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1250s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.53.9e-16129218198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k ++ps+v+   +l l  +f+++h  +  ++ ++tl de+ +++   +    ++ +  l++GWk+F+ a++L +gD +vF+l++ + f
  Kaladp1250s0002.2.p 129 FVKPMLPSHVSGGFWLGLNVSFCKRHLPN--RDSEVTLIDEDDEEYPTVY--LPRKTG--LSGGWKGFAVAHDLTDGDALVFQLIKPTAF 212
                          89************************533..5569***************..555544..************************997888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v + r
  Kaladp1250s0002.2.p 213 --KVYITR 218
                          ..776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-21122220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-24122221IPR015300DNA-binding pseudobarrel domain
CDDcd100175.48E-27127218No hitNo description
PfamPF023629.4E-14129218IPR003340B3 DNA binding domain
SMARTSM010196.8E-23129220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVQPEYEQSR QKRLEENRKR MEALNLPQLS QALRQFSPGL TTPPMKQRKP RAVEKKMVPV  60
RRSDRLSDKP GPVYLEVDVD RYDRVTIPRR VSKARDLSNQ VYASEEERSY SIKKAEEVQA  120
ALDATHPSFV KPMLPSHVSG GFWLGLNVSF CKRHLPNRDS EVTLIDEDDE EYPTVYLPRK  180
TGLSGGWKGF AVAHDLTDGD ALVFQLIKPT AFKVYITRAS GFKKTAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520114.16e-98PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ49e-75Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A061FCQ78e-94A0A061FCQ7_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGGLYMA04G04030.13e-91(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-76B3 family protein